Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs143873111 chr17:45471083 AAAAT/A 2.38E-5 253 19.83 33.17 33.83 KM Plot
SARC rs144291000 chr3:125857136 ATT/A 9.72E-5 253 32.3 33.9 13.03 KM Plot
SARC rs145219333 chr9:115627288 C/CAT 1.48E-6 255 10.6 33.17 31.97 KM Plot
SARC rs1464059 chr3:142706260 G/A 9.74E-5 254 30.93 35.77 9.13 KM Plot
SARC rs1464156 chr8:129444147 A/T 1.74E-13 258 33.9 23.17 3.97 KM Plot
SARC rs146577388 chr8:75946061 CAAT/C 4.72E-5 255 32.6 34.17 15.53 KM Plot
SARC rs1467746 chr21:20121085 A/G 2.3E-8 258 3.97 32.9 30.77 KM Plot
SARC rs147140565 chr3:53086857 GA/G 0 257 32.3 32.87 2.13 KM Plot
SARC rs1475293 chr9:115619587 C/T 1.2E-6 258 32.13 32.6 10.6 KM Plot
SARC rs147692567 chr15:40244033 AC/A 4.8E-5 256 30.77 41.17 13.4 KM Plot
SARC rs147807016 chr3:42647739 T/TC 3.03E-6 256 32.13 36.4 6 KM Plot
SARC rs1487025 chr2:78001749 A/G 3.79E-8 258 3.97 37.62 31.57 KM Plot
SARC rs149942706 chr8:129449639 C/CTCTCTG 2.57E-13 255 33.83 23.17 3.97 KM Plot
SARC rs16831059 chr3:159807334 C/G 2.03E-12 258 3.1 30.73 32.13 KM Plot
SARC rs16831062 chr3:159811662 G/T 1.6E-12 258 32.3 30.3 3.1 KM Plot